L1-NORM FITTING OF ELLIPTIC PARABOLOIDS WITH PRIOR INFORMATION FOR ENHANCED CONIFEROUS TREE LOCALIZATION IN ALS POINT CLOUDS

Airborne laser scanning (ALS) is an established tool for deriving various tree characteristics in forests. In some applications, an accurate pointwise estimate of the tree position is required. For dense data acquired by TLS or UAV-mounted scanners, this can be achieved by locating the stem, whose center coordinates are then used for deriving the planimetric tree position. However, in case of standard ALS data this is often not an option due to the low probability of obtaining stem hits in operational scenarios of forest mapping campaigns. This paper presents an alternative, indirect approach where the tree position is approximated as the center of a quadric surface which best represents the tree crown shape. The study targets coniferous trees due to their distinct crown shape which may be approximated by an elliptic paraboloid. It is assumed that individual tree point clusters are given and the task is to find the tree center for each cluster. We first consider the general problem of fitting an elliptic paraboloid with a known axis and an L1 residual norm error criterion, which is more robust to outliers compared to least-squares fitting. We formulate this problem as a quadratically constrained quadratic program (QCQP), and show how prior knowledge on the crown shape and center position can be incorporated. Next, a computationally simpler problem is considered where the paraboloid semiaxis lengths are constrained to be equal, and a corresponding linear program is constructed. Experiments on ALS datasets of forest plots from Bavaria, Germany and Oregon, USA reveal that a reduction in median tree position error of up to 20% can be attained compared to both least-squares fitting and other baseline techniques, resulting in an absolute error of ca. 22 cm on both datasets

Structure and conductance histogram of atomic-sized Au contacts

Many experiments have shown that the conductance histograms of metallic atomic-sized contacts exhibit a peak structure, which is characteristic of the corresponding material. The origin of these peaks still remains as an open problem. In order to shed some light on this issue, we present a theoretical analysis of the conductance histograms of Au atomic contacts. We have combined classical molecular dynamics simulations of the breaking of nanocontacts with conductance calculations based on a tight-binding model. This combination gives us access to crucial information such as contact geometries, forces, minimum cross-section, total conductance and transmission coefficients of the individual conduction channels. The ensemble of our results suggests that the low temperature Au conductance histograms are a consequence of a subtle interplay between mechanical and electrical properties of these nanocontacts. At variance with other suggestions in the literature, our results indicate that the peaks in the Au conductance histograms are not a simple consequence of conductance quantization or the existence of exceptionally stable radii. We show that the main peak in the histogram close to one quantum of conductance is due to the formation of single-atom contacts and chains of gold atoms. Moreover, we present a detailed comparison with experimental results on Au atomic contacts where the individual channel transmissions have been determined.Comment: 11 pages, 10 figures, version to be published in Phys. Rev. B. The paper has been thoroughly revised and several figures have been replaced by new one

First estimation of Eurasian lynx (Lynx lynx) abundance and density using digital cameras and capture–recapture techniques in a German national park

Primera estima de la abundancia y de la densidad del lince euroasiático (Lynx lynx) utilizando cámaras digitales y técnicas de captura–recaptura en un parque nacional alemán Al lince euroasiático se le puede identificar individualmente mediante las marcas de su pelaje, que son únicas, lo que le convierte en un candidato ideal para los estudios de captura–recaptura (CMR). Hemos evaluado el uso de la fotografía digital para estimar la abundancia y la densidad de la población del lince euroasiático en el Parque Nacional Forestal Bávaro. Desde noviembre del 2008 a enero del 2009 establecimos 24 lugares de trampeo, cada uno de ellos provisto de dos cámaras encaradas entre sí, en lugares de paso frecuentados. Colocamos las unidades basándonos en una cuadrícula sistemática de 2,7 km. Capturamos cinco linces independientes y tres jóvenes, y calculamos las estimas de abundancia utilizando el programa Mark. También comparamos las estimas de densidad mediante el método MMDM (distancia media máxima recorrida) de datos telemétricos (½MMDMGPS) y de datos de las cámaras trampa (½MMDMCAM). Hallamos que en un área muestreada eficazmente de 664 km2 la densidad del lince euroasiático era de 0,9 individuos/100 km2 mediante ½MMDMCAM. La densidad del lince euroasiático calculada mediante el método ½MMDMGPS fue de 0,4 individuos/100 km2 en una zona muestreada eficazmente de 1.381 km2. Nuestros resultados sugieren que un muestreo fotográfico CMR a largo plazo y a gran escala puede ser una herramienta muy útil para monitorizar las tendencias poblacionales del lince euroasiático, según la Directiva de Hábitat, Flora y Fauna de la Unión Europea.Primera estima de la abundancia y de la densidad del lince euroasiático (Lynx lynx) utilizando cámaras digitales y técnicas de captura–recaptura en un parque nacional alemán Al lince euroasiático se le puede identificar individualmente mediante las marcas de su pelaje, que son únicas, lo que le convierte en un candidato ideal para los estudios de captura–recaptura (CMR). Hemos evaluado el uso de la fotografía digital para estimar la abundancia y la densidad de la población del lince euroasiático en el Parque Nacional Forestal Bávaro. Desde noviembre del 2008 a enero del 2009 establecimos 24 lugares de trampeo, cada uno de ellos provisto de dos cámaras encaradas entre sí, en lugares de paso frecuentados. Colocamos las unidades basándonos en una cuadrícula sistemática de 2,7 km. Capturamos cinco linces independientes y tres jóvenes, y calculamos las estimas de abundancia utilizando el programa Mark. También comparamos las estimas de densidad mediante el método MMDM (distancia media máxima recorrida) de datos telemétricos (½MMDMGPS) y de datos de las cámaras trampa (½MMDMCAM). Hallamos que en un área muestreada eficazmente de 664 km2 la densidad del lince euroasiático era de 0,9 individuos/100 km2 mediante ½MMDMCAM. La densidad del lince euroasiático calculada mediante el método ½MMDMGPS fue de 0,4 individuos/100 km2 en una zona muestreada eficazmente de 1.381 km2. Nuestros resultados sugieren que un muestreo fotográfico CMR a largo plazo y a gran escala puede ser una herramienta muy útil para monitorizar las tendencias poblacionales del lince euroasiático, según la Directiva de Hábitat, Flora y Fauna de la Unión Europea.ABC_35-2_2012 First estimation of Eurasian lynx (Lynx lynx) abundance and density using digital cameras and capture–recapture techniques in a German national park Weingarth, K., Heibl, C., Knauer, F., Zimmermann, F., Bufka, L., Heurich, M. Abstract Eurasian lynx are individually identifiable by their unique coat markings, making them ideal candidates for capture–recapture (CMR) surveys. We evaluated the use of digital photography to estimate Eurasian lynx population abundance and density within the Bavarian Forest National Park. From November 2008 to January 2009 we placed 24 camera trap sites, each with two cameras facing each other on well–used walking tracks). The units were placed based on a systematic grid of 2.7 km. We captured five independent and three juvenile lynx and calculated abundance estimates using Program Mark. We also compared density estimates based on the MMDM method (Mean Maximum Distance Moved) from telemetry data (½MMDMGPS) and from camera trapping data (½MMDMCAM). We estimated that in an effectively sampled area of 664 km2 the Eurasian lynx density was 0.9 individuals/100 km2 with ½MMDMCAM. The Eurasian lynx density calculated with ½MMDMGPS was 0.4 individuals/100 km2 in an effectively sampled area of 1,381 km2. Our results suggest that long–term photographic CMR sampling on a large scale may be a useful tool to monitor population trends of Eurasian lynx in accordance with the Fauna–Flora–Habitat Directive of the European Union

Carcasses at Fixed Locations Host a Higher Diversity of Necrophilous Beetles

In contrast to other necro mass, such as leaves, deadwood, or dung, the drivers of insect biodiversity on carcasses are still incompletely understood. For vertebrate scavengers, a richer community was shown for randomly placed carcasses, due to lower competition. Here we tested if scavenging beetles similarly show a higher diversity at randomly placed carcasses compared to easily manageable fixed places. We sampled 12,879 individuals and 92 species of scavenging beetles attracted to 17 randomly and 12 at fixed places exposed and decomposing carcasses of red deer, roe deer, and red foxes compared to control sites in a low range mountain forest. We used rarefaction-extrapolation curves along the Hill-series to weight diversity from rare to dominant species and indicator species analysis to identify differences between placement types, the decay stage, and carrion species. Beetle diversity decreased from fixed to random locations, becoming increasingly pronounced with weighting of dominant species. In addition, we found only two indicator species for exposure location type, both representative of fixed placement locations and both red listed species, namely Omosita depressa and Necrobia violacea. Furthermore, we identified three indicator species of Staphylinidae (Philonthus marginatus and Oxytelus laqueatus) and Scarabaeidae (Melinopterus prodromus) for larger carrion and one geotrupid species Anoplotrupes stercorosus for advanced decomposition stages. Our study shows that necrophilous insect diversity patterns on carcasses over decomposition follow different mechanisms than those of vertebrate scavengers with permanently established carrion islands as important habitats for a diverse and threatened insect fauna.publishedVersio

Predicting kill sites of an apex predator from GPS data in different multi‐prey systems

Kill rates are a central parameter to assess the impact of predation on prey species. An accurate estimation of kill rates requires a correct identification of kill sites, often achieved by field-checking GPS location clusters (GLCs). However, there are potential sources of error included in kill-site identification, such as failing to detect GLCs that are kill sites, and misclassifying the generated GLCs (e.g., kill for nonkill) that were not field checked. Here, we address these two sources of error using a large GPS dataset of collared Eurasian lynx (Lynx lynx), an apex predator of conservation concern in Europe, in three multiprey systems, with different combinations of wild, semidomestic, and domestic prey. We first used a subsampling approach to investigate how different GPS-fix schedules affected the detection of GLC-indicated kill sites. Then, we evaluated the potential of the random forest algorithm to classify GLCs as nonkills, small prey kills, and ungulate kills. We show that the number of fixes can be reduced from seven to three fixes per night without missing more than 5% of the ungulate kills, in a system composed of wild prey. Reducing the number of fixes per 24 h decreased the probability of detecting GLCs connected with kill sites, particularly those of semidomestic or domestic prey, and small prey. Random forest successfully predicted between 73%–90% of ungulate kills, but failed to classify most small prey in all systems, with sensitivity (true positive rate) lower than 65%. Additionally, removing domestic prey improved the algorithm’s overall accuracy. We provide a set of recommendations for studies focusing on kill-site detection that can be considered for other large carnivore species in addition to the Eurasian lynx. We recommend caution when working in systems including domestic prey, as the odds of underestimating kill rates are higher

Targeting the Complement Serine Protease MASP-2 as a Therapeutic Strategy for Coronavirus Infections

MASP-2, mannose-binding protein-associated serine protease 2, is a key enzyme in the lectin pathway of complement activation. Hyperactivation of this protein by human coronaviruses SARS-CoV, MERS-CoV and SARS-CoV-2 has been found to contribute to aberrant complement activation in patients, leading to aggravated lung injury with potentially fatal consequences. This hyperactivation is triggered in the lungs through a conserved, direct interaction between MASP-2 and coronavirus nucleocapsid (N) proteins. Blocking this interaction with monoclonal antibodies and interfering directly with the catalytic activity of MASP-2, have been found to alleviate coronavirus-induced lung injury both in vitro and in vivo. In this study, a virtual library of 8736 licensed drugs and clinical agents has been screened in silico according to two parallel strategies. The first strategy aims at identifying direct inhibitors of MASP-2 catalytic activity, while the second strategy focusses on finding protein-protein interaction inhibitors (PPIs) of MASP-2 and coronaviral N proteins. Such agents could represent promising support treatment options to prevent lung injury and reduce mortality rates of infections caused by both present and future-emerging coronaviruses. Forty-six drug repurposing candidates were purchased and, for the ones selected as potential direct inhibitors of MASP-2, a preliminary in vitro assay was conducted to assess their interference with the lectin pathway of complement activation. Some of the tested agents displayed a dose-response inhibitory activity of the lectin pathway, potentially providing the basis for a viable support strategy to prevent the severe complications of coronavirus infections

Sustainable protected areas: Synergies between biodiversity conservation and socioeconomic development

Reconciling conservation and socioeconomic development goals is key to sustainability but remains a source of fierce debate. Protected areas (PAs) are believed to play an essential role in achieving these seemingly conflicting goals. Yet, there is limited evidence as to whether PAs are actually achieving the two goals simultaneously.Here, we investigate when and to what extent synergies or trade-offs between biodiversity conservation and local socioeconomic development occur. To explore these relationships, we collected data across a wide range of socioeconomic settings through face-to-face survey with PA managers from 114 African and European PAs using structured questionnaire.We found synergies between biodiversity conservation and socioeconomic development for 62% of the PAs, albeit with significant differences between African (55%) and European PAs (75%). Moreover, the sustainability of PAs in conserving biodiversity was strongly correlated with the empowerment of the PA management and the involvement of local communities in PA planning and decision-making processes.Our results demonstrate that for PAs to promote synergies between biodiversity conservation and local socioeconomic development, and to enhance their long-term sustainability, they should invest in the empowerment of their respective management and involvement of local communities in their planning and management activities.Read the free Plain Language Summary for this article on the Journal blog

Electronic transport and vibrational modes in the smallest molecular bridge: H2 in Pt nanocontacts

We present a state-of-the-art first-principles analysis of electronic transport in a Pt nanocontact in the presence of H2 which has been recently reported by Smit et al. in Nature 419, 906 (2002). Our results indicate that at the last stages of the breaking of the Pt nanocontact two basic forms of bridge involving H can appear. Our claim is, in contrast to Smit et al.'s, that the main conductance histogram peak at G approx 2e^2/h is not due to molecular H2, but to a complex Pt2H2 where the H2 molecule dissociates. A first-principles vibrational analysis that compares favorably with the experimental one also supports our claim .Comment: 5 pages, 3 figure